PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 443aa    MW: 48800.2 Da    PI: 4.9374
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.62.6e-2721122199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie+++df +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +df
  OBART01G20540.1  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYDF 114
                      68899*765566********************************************************************************** PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  OBART01G20540.1 115 LVDILRNH 122
                      ***98665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.57E-1628122IPR009072Histone-fold
PfamPF008082.0E-944106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEQTLDVPRS LRLPAPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAKAIASTE SYDFLVDILR  120
NHRVKHKSTP CSTLTTKRCR LVDQPSTSHM PYQHQLPQFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSPMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIVGFSS  240
PAVLASMMSP ALLEVARTSL NPPNSHSICT MNMINSSDPS GSSVGDINVA NQASLAPSGH  300
FNPAILRESS CPSFLHSNNN DTIVAIPEGV DISGTMDVAS DVAAIVINGQ EEHERETNVE  360
HHQQNEIYES IDIGIINASV ADGNKCSISW DELGMADDSL LDKFLEEFQV RNDGVLCTGI  420
ELHEDPFLGD VMLENPSTSN ANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C7e-141811915117HapE
4g92_C7e-141811915117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621623.10.0PREDICTED: uncharacterized protein LOC4324193 isoform X2
RefseqXP_015621624.10.0PREDICTED: uncharacterized protein LOC4324193 isoform X3
TrEMBLA0A0D3EQH60.0A0A0D3EQH6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA001349-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-24nuclear factor Y, subunit C4